I am trying to use the following commands in the notebook:
Jmol is a Java-based and open-source app that makes it possible for you to visualize, study and manage molecules in a 3D environment. Interesting utility that is exactly what you want from a. While the developer is fixing the problem, try using an older version. If you need the previous version of Jmol, check out the app's version history which includes all versions available to download. Download prior versions of Jmol for Mac. All previous versions of Jmol are virus-free and free to download at Uptodown. Jmol Mac 14.31.8 – Download September 28, 2020 No Comments Free and open source molecule viewer that helps users in biochemistry and chemistry research fields to study structures in a 3D environment. Jmol is a free molecular visualization program that allows you to explore protein structures in a fully interactive 3-dimensional display and 'design' protein models for 3D printing.
but Jmol terminates and just returns a black picture. These commands work fine in the command line. I tried this both on my laptop and on the notebook server at sage.lacim.uqam.ca. Is there some configuration necessary to display jmol pictures in the notebook?
Thanks,
Anne
Jmol For Mac Download
Comments
This is almost certainly to do with your specific configuration. We have had these kinds of issues on a recurring basis. I would suggest searching sage-support (though it's hard to do sometimes) for this. Sometimes it's a Linux thing, sometimes you need to update your Java, and sometimes it's a bug. What version do you have? We did fix some of these things in patches that should be in 4.7.
If you are using Mac OS X + Chrome there is a good thread on sage-support, although that problem was fixed (at least in 4.7.1). You may need to enable your browser to load java applets. Try going to http://jmol.sourceforge.net/demo/alphahelix/ and see if the jmol applet loads.
Thank you for your answers. I am running sage-4.7.1 under Mac OS. The jmol applet loads fine for me when I go to http://jmol.sourceforge.net/demo/alphahelix/ . I am not sure which operating system http://sage.lacim.uqam.ca uses, but the sage version there is sage-4.7. You can get a free account and see whether the problem also occurs for you there.
Thank you for your answers. I am running sage-4.7.1 under Mac OS. The jmol applet loads fine for me when I go to http://jmol.sourceforge.net/demo/alphahelix/ . I am not sure which operating system http://sage.lacim.uqam.ca uses, but the sage version there is sage-4.7. You can get a free account and see whether the problem also occurs for you there.
PS: I am using Firefox.
Jmol is a free and open source 3D viewer software app filed under 3d design and made available by Egon Willighagen for Windows.
The review for Jmol has not been completed yet, but it was tested by an editor here on a PC.
If you would like to submit a review of this software download, we welcome your input and encourage you to submit us something!
Molecule viewer for chemistry, biochemistry, physics and materials science
Jmol is a Java based application and an applet for displaying 3D chemical information. Jmol is a molecule viewer for students, educators, and researchers in chemistry, biochemistry, physics, and materials science.
Features include reading a variety of file types, including PyMOL session files and output from quantum chemistry programs, file writing (including JPG, PNG, PNGJ (PNG ZIP), and ZIP formats), and animation of multi-frame files and computed normal modes from quantum programs, surfaces, translucency and more.
Jmol on 32-bit and 64-bit PCs
I am trying to use the following commands in the notebook:
Jmol is a Java-based and open-source app that makes it possible for you to visualize, study and manage molecules in a 3D environment. Interesting utility that is exactly what you want from a. While the developer is fixing the problem, try using an older version. If you need the previous version of Jmol, check out the app's version history which includes all versions available to download. Download prior versions of Jmol for Mac. All previous versions of Jmol are virus-free and free to download at Uptodown. Jmol Mac 14.31.8 – Download September 28, 2020 No Comments Free and open source molecule viewer that helps users in biochemistry and chemistry research fields to study structures in a 3D environment. Jmol is a free molecular visualization program that allows you to explore protein structures in a fully interactive 3-dimensional display and 'design' protein models for 3D printing.
but Jmol terminates and just returns a black picture. These commands work fine in the command line. I tried this both on my laptop and on the notebook server at sage.lacim.uqam.ca. Is there some configuration necessary to display jmol pictures in the notebook?
Thanks,
Anne
Jmol For Mac Download
Comments
This is almost certainly to do with your specific configuration. We have had these kinds of issues on a recurring basis. I would suggest searching sage-support (though it's hard to do sometimes) for this. Sometimes it's a Linux thing, sometimes you need to update your Java, and sometimes it's a bug. What version do you have? We did fix some of these things in patches that should be in 4.7.
If you are using Mac OS X + Chrome there is a good thread on sage-support, although that problem was fixed (at least in 4.7.1). You may need to enable your browser to load java applets. Try going to http://jmol.sourceforge.net/demo/alphahelix/ and see if the jmol applet loads.
Thank you for your answers. I am running sage-4.7.1 under Mac OS. The jmol applet loads fine for me when I go to http://jmol.sourceforge.net/demo/alphahelix/ . I am not sure which operating system http://sage.lacim.uqam.ca uses, but the sage version there is sage-4.7. You can get a free account and see whether the problem also occurs for you there.
Thank you for your answers. I am running sage-4.7.1 under Mac OS. The jmol applet loads fine for me when I go to http://jmol.sourceforge.net/demo/alphahelix/ . I am not sure which operating system http://sage.lacim.uqam.ca uses, but the sage version there is sage-4.7. You can get a free account and see whether the problem also occurs for you there.
PS: I am using Firefox.
Jmol is a free and open source 3D viewer software app filed under 3d design and made available by Egon Willighagen for Windows.
The review for Jmol has not been completed yet, but it was tested by an editor here on a PC.
If you would like to submit a review of this software download, we welcome your input and encourage you to submit us something!
Molecule viewer for chemistry, biochemistry, physics and materials science
Jmol is a Java based application and an applet for displaying 3D chemical information. Jmol is a molecule viewer for students, educators, and researchers in chemistry, biochemistry, physics, and materials science.
Features include reading a variety of file types, including PyMOL session files and output from quantum chemistry programs, file writing (including JPG, PNG, PNGJ (PNG ZIP), and ZIP formats), and animation of multi-frame files and computed normal modes from quantum programs, surfaces, translucency and more.
Jmol on 32-bit and 64-bit PCs
This download is licensed as freeware for the Windows (32-bit and 64-bit) operating system on a laptop or desktop PC from 3d design without restrictions. Jmol 14.31.18 is available to all software users as a free download for Windows 10 PCs but also without a hitch on Windows 7 and Windows 8.
Compatibility with this 3D viewer software may vary, but will generally run fine under Microsoft Windows 10, Windows 8, Windows 8.1, Windows 7, Windows Vista and Windows XP on either a 32-bit or 64-bit setup. A separate x64 version may be available from Egon Willighagen.
Jmol Macros
Filed under:Jmol For Mac Os
- Jmol Download
- Freeware 3D Design
- Open source and GPL software
- Portable Software
- Major release: Jmol 14.31